Novel computational approaches for finding ORI
Abstract
Keywords
Full Text:
PDFReferences
. Wagner, E. K., Hewlett, M. J., Bloom, D. C., & Camerini, D. (2007). Basic Virology (3rd ed.) [E-book]. Wiley-Blackwell.
. Nature. (n.d.). Replication | Learn Science at Scitable. Scitable by Nature Education. Retrieved February 2, 2022, from https://www.nature.com/scitable/definition/replication-33/ [3]. Okazaki, R., Okazaki, T., Sakabe, K., Sugimoto, K., & Sugino, A. (1968). Mechanism of DNA chain growth. I. Possible discontinuity and unusual secondary structure of newly synthesized chains. Proceedings of the National Academy of Sciences, 59(2), 598–605. https://doi.org/10.1073/pnas.59.2.598
. Kumar, S., Chinnusamy, V., & Mohapatra, T. (2018). Epigenetics of Modified DNA Bases: 5-Methylcytosine and Beyond. Frontiers in Genetics, 9. https://doi.org/10.3389/fgene.2018.00640
. Breiling, A., & Lyko, F. (2015). Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond. Epigenetics & Chromatin, 8(1). https://doi.org/10.1186/s13072-015-0016-6
. Compeau, P. (2022). BIOINFORMATICS ALGORITHMS,VOL.I (2nd ed., Vol. 1). Active
Learning Publishers.
. Lobry, J. R. (1996). Asymmetric substitution patterns in the two DNA strands of bacteria. Molecular Biology and Evolution, 13(5), 660–665. https://doi.org/10.1093/oxfordjournals.molbev.a025626
. Grigoriev, A. (1998). Analyzing genomes with cumulative skew diagrams. Nucleic Acids Research, 26(10), 2286–2290. https://doi.org/10.1093/nar/26.10.2286
. Gao, F., & Zhang, C. T. (2008). Ori-Finder: A web-based system for finding oriC s in unannotated bacterial genomes. BMC Bioinformatics, 9(1).
https://doi.org/10.1186/1471-2105-9-79
. Luo, H., Zhang, C. T., & Gao, F. (2014). Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes. Frontiers in Microbiology, 5. https://doi.org/10.3389/fmicb.2014.00482
. Chen, W., Feng, P., & Lin, H. (2012). Prediction of replication origins by calculating DNA structural properties. FEBS Letters, 586(6), 934–938. https://doi.org/10.1016/j.febslet.2012.02.034
. Li, W. C., Zhong, Z. J., Zhu, P. P., Deng, E. Z., Ding, H., Chen, W., & Lin, H. (2014).
Sequence analysis of origins of replication in the Saccharomyces cerevisiae genomes.
Frontiers in Microbiology, 5. https://doi.org/10.3389/fmicb.2014.00574
. Zhang, C. T., Gao, F., & Zhang, R. (2005). Segmentation algorithm for DNA sequences. Physical Review E, 72(4). https://doi.org/10.1103/physreve.72.041917
. Liu, B., Weng, F., Huang, D. S., & Chou, K. C. (2018). iRO-3wPseKNC: identify DNA replication origins by three-window-based PseKNC. Bioinformatics, 34(18), 3086–3093. https://doi.org/10.1093/bioinformatics/bty312
Dao, F. Y., Lv, H., Zulfiqar, H., Yang, H., Su, W., Gao, H., Ding, H., & Lin, H. (2020). A computational platform to identify origins of replication sites in eukaryotes. Briefings in Bioinformatics, 22(2), 1940–1950. https://doi.org/10.1093/bib/bbaa017
DOI: https://doi.org/10.37628/ijcbb.v8i1.749
Refbacks
- There are currently no refbacks.